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Corante Blogs examine, through the eyes of leading observers, analysts, thinkers, and doers, critical themes and memes in technology, business, law, science, and culture.

The Press Will Be Outsourced Before Stopped

Vin Crosbie, on the challenges, financial and otherwise, that newspaper publishers are facing: "The real problem, Mr. Newspaperman, isn't that your content isn't online or isn't online with multimedia. It's your content. Specifically, it's what you report, which stories you publish, and how you publish them to people, who, by the way, have very different individual interests. The problem is the content you're giving them, stupid; not the platform its on."
by Vin Crosbie in Rebuilding Media

Travels In Numerica Deserta

There's a problem in the drug industry that people have recognized for some years, but we're not that much closer to dealing with it than we were then. We keep coming up with these technologies and techniques which seem as if they might be able to help us with some of our nastiest problems - I'm talking about genomics in all its guises, and metabolic profiling, and naturally the various high-throughput screening platforms, and others. But whether these are helping or not (and opinions sure do vary), one thing that they all have in common is that they generate enormous heaps of data.
by Derek Lowe in In the Pipeline

Disrobing the Emperor: The online “user experience” isn't much of one

Now that the Web labor market is saturated and Web design a static profession, it's not surprising that 'user experience' designers and researchers who've spent their careers online are looking for new worlds to conquer. Some are returning to the “old media” as directors and producers. More are now doing offline consulting (service experience design, social policy design, exhibition design, and so on) under the 'user experience' aegis. They argue that the lessons they've learned on the Web can be applied to phenomena in the physical and social worlds. But there are enormous differences...
by Bob Jacobson in Total Experience

Second Life: What are the real numbers?

Clay Shirky, in deconstructing Second Life hype: "Second Life is heading towards two million users. Except it isn’t, really... I suspect Second Life is largely a 'Try Me' virus, where reports of a strange and wonderful new thing draw the masses to log in and try it, but whose ability to retain anything but a fraction of those users is limited. The pattern of a Try Me virus is a rapid spread of first time users, most of whom drop out quickly, with most of the dropouts becoming immune to later use."
by Clay Shirky in Many-to-Many

The democratisation of everything

Over the last few years we've seen old barriers to creativity coming down, one after the other. New technologies and services makes it trivial to publish text, whether by blog or by print-on-demand. Digital photography has democratised a previously expensive hobby. And we're seeing the barriers to movie-making crumble, with affordable high-quality cameras and video hosting provided by YouTube or Google Video and their ilk... Music making has long been easy for anyone to engage in, but technology has made high-quality recording possible without specialised equipment, and the internet has revolutionised distribution, drastically disintermediating the music industry... What's left? Software maybe? Or maybe not."
by Suw Charman in Strange Attractor

RNA Interference: Film at Eleven

Derek Lowe on the news that the Nobel Prize for medicine has gone to Craig Mello and Andrew Fire for their breakthrough work: "RNA interference is probably going to have a long climb before it starts curing many diseases, because many of those problems are even tougher than usual in its case. That doesn't take away from the discovery, though, any more than the complications of off-target effects take away from it when you talk about RNAi's research uses in cell culture. The fact that RNA interference is trickier than it first looked, in vivo or in vitro, is only to be expected. What breakthrough isn't?"
by Derek Lowe in In the Pipeline

PVP and the Honorable Enemy

Andrew Phelps: "Recently my WoW guild has been having a bit of a debate on the merits of Player-vs.-Player (PvP) within Azeroth. My personal opinion on this is that PvP has its merits, and can be incredible fun, but the system within WoW is horridly, horribly broken. It takes into account the concept of the battle, but battle without consequence, without emotive context, and most importantly, without honor..."

From later in the piece: "When I talk about this with people (thus far anyway) I typically get one of two responses, either 'yeah, right on!' or 'hey, it’s war, and war isn’t honorable – grow the hell up'. There is a lot to be said for that argument – but the problem is that war in the real historical world has very different constraints that are utterly absent from fantasized worlds..."
by Andrew Phelps in Got Game

Rats Rule, Right?

Derek Lowe: "So, you're developing a drug candidate. You've settled on what looks like a good compound - it has the activity you want in your mouse model of the disease, it's not too hard to make, and it's not toxic. Everything looks fine. Except. . .one slight problem. Although the compound has good blood levels in the mouse and in the dog, in rats it's terrible. For some reason, it just doesn't get up there. Probably some foul metabolic pathway peculiar to rats (whose innards are adapted, after all, for dealing with every kind of garbage that comes along). So, is this a problem?.."
by Derek Lowe in In the Pipeline

Really BAD customer experience at Albertsons Market

Bob Jacobson, on shopping at his local Albertsons supermarket where he had "one of the worst customer experiences" of his life: "Say what you will about the Safeway chain or the Birkenstock billionaires who charge through the roof for Whole Foods' organic fare, they know how to create shopping environments that create a more pleasurable experience, at its best (as at Whole Foods) quite enjoyable. Even the warehouses like Costco and its smaller counterpart, Smart & Final, do just fine: they have no pretentions, but neither do they dump virtual garbage on the consumer merely to create another trivial revenue stream, all for the sake of promotions in the marketing department..."
by Strange Attractor in Total Experience

The Guardian's "Comment is Free"

Kevin Anderson: "First off, I want to say that I really admire the ambition of the Guardian Unlimited’s Comment is Free. It is one of the boldest statements made by any media company that participation needs to be central to a radical revamp of traditional content strategies... It is, therfore, not hugely surprising to find that Comment is Free is having a few teething troubles..."
by Kevin Anderson in strange
In the Pipeline: Don't miss Derek Lowe's excellent commentary on drug discovery and the pharma industry in general at In the Pipeline

The Loom

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December 26, 2005

The Other Panda's Thumb

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Posted by Carl Zimmer

medium%20red%20panda.jpgIf you could travel back to Spain about ten million years ago, you'd have no end of animals to watch, from apes to bear-dogs to saber-tooth tigers. With so many creatures jockeying for your attention (and perhaps chasing you down for lunch), you might well miss the creature shown here. Simocyon batalleri was roughly the size and shape of a puma, although its face looked more like a raccoon's. If anything were to draw your attention to Simocyon, it would probably be the animal's gift for climbing trees. Most big carnivorous mammals of the time were restricted to the ground; some may have been able to climb up tree trunks and onto bigger boughs. But judging from its fossils, Simocyon could have climbed trees out to their slender branches. It could do so because, unlike other carnivores, it had thumbs that it could use to grasp branches much like a monkey would. Those thumbs turn out to have a fascinating story to tell about the tinkering habits of evolution.

This story is a sequel of sorts. Part One was an essay that Stephen Jay Gould published in Natural History in 1978 called "The Panda's Peculiar Thumb." It's a classic example of Gould's skill at making a provocative argument about evolution with a flair so elegant that it could draw in the least scientific reader. (If you haven't read it, you really should check it out, either in Gould's collection of essays, The Panda's Thumb, or here. And also be sure to read the blog of the same name!)

In the essay, Gould complained that textbooks liked to illustrate evolution with examples of optimal design, such as insects that exquisitely mimicked a dead leaf. "Odd arrangements and funny solutions are the proof of evolution," he argued. Darwin himself spent a lot of effort uncovering the strange contortions by which organs changes shape and took on new functions. And to Gould, the thumb of the giant panda was the epitome of a funny solution.

Before a giant panda eats a piece of bamboo—its favorite meal—it grabs the shoot between its flexible thumb and finger and strips off the leaves. But this useful thumb is not really a thumb at all, at least in our sense of the word. Pandas descend from carnivorous mammal ancestors, as reflected in the many traits they share with bears, dogs, and other relatives. For one thing, its true thumb is lined up with its other fingers. What looks like its "thumb" is actually a wrist bone (the sesamoid) that evolved until it was so big that it stuck out to one side of its forepaw. The muscles that control the bone have become rearranged so that now it can move much like our own opposable thumb. Gould pointed out that the corresponding bone in the panda ankle is somewhat oversized, which he suggested was the result of genes that controlled the growth of the sesamoid in all its limbs. The large size of its ankle bones serve no function. Instead they're merely the byproduct of natural selection acting on other parts of the panda body.

I find Gould's essay a little peculiar to reread today. It's as if someone had drawn a picture of the head of a dime, and Gould said, "Outrageous—it's the tail that makes the dime!" Scientists who study the evolution of optimal design don't deny that evolution may be optimizing things with weird origins and which may have once had other uses. The wings of different species of bats are exquisitely well adapted to different ecological niches—open spaces, dense forests, and so on. But the biologists who study those wings would not deny that they originated from the forelegs of mammals, or that an entirely different sort of wing might actually do a better job. But my opinion may be colored by the fact that I'm reading the essay in 2005. Perhaps what seem like straw men today were genuine points of view in the 1970s. Of course, it's largely thanks to Gould that such overly adaptationist points of view are not so common today.

There's an interesting omission to "The Panda's Peculiar Thumb": the red panda. This bushy-tailed creature is the size of a small dog and climbs in trees. Found in East Asia, it eats bamboo, along with lichen, acorns, and even bird eggs. It earned its name from the similarities it bore to giant pandas. Those similarities include a false thumb that is actually an exaggerated sesamoid bone in the wrist.

More detailed studies raised doubts about whether the two pandas were closely related. But for a long time scientists had a difficult time determining their kinship. The picture has cleared up dramatically in the past few years thanks to large-scale studies of mammal DNA. These studies (such as this one and this one) indicate that giant pandas and red pandas are only distantly related. Their common ancestor lived 40 million years ago. One lineage gave rise to bears, including giant pandas. Another lineage gave rise to red pandas as well as skunks, raccoons, and weasels.

This research casts the panda's thumb in an interesting new light. It apparently evolved independently in two different lineages of carnivorous mammals. This is fascinating for a couple reasons. Two independently evolved sesamoid thumbs hint that carnivores are so constrained by their anatomy that they have only one pathway by which they can evolve something that will work like an opposable thumb. It's also intriguing that these two thumbed creatures also share a taste for bamboo. That coincidence may suggest that the same ecological shift from meat-eater to bamboo-eater drove the evolution of a bamboo-processing thumb. It's the sort of hypothesis that evolutionary biologists can test. They test it by digging up fossil relatives of living red pandas or giant pandas.

And now they've found one—Simocyon batalleri.

In a paper that will be posted was published on-line this week by the Proceedings of the National Academy of Sciences, a team of paleontologists describe Simocyon batalleri, which turns out to be an ancient relative of red pandas. And like living red pandas, it had a thumb made out of a sesamoid bone. But its jaws, teeth, and other traits were not the sort you find in plant-eating mammals. Instead, it hunted or scavenged prey.

In the red panda lineage, in other words, the panda's thumb evolved before red pandas began to use it to strip bamboo. The researchers suggest that the thumb may have originally evolved for a different function: grasping branches. Simocyon may have used this skill to escape from bigger, faster predators. It might have even stolen dead prey cached in trees by saber-toothed cats and retreated out of range. Only after the panda's thumb evolved in a tree-climbing predator did some descendants co-opt it forfeeding on bamboo. In this respect, red pandas appear to have taken a different evolutionary path than giant pandas. No fossil of panda-like bears has shown any trace of a panda's thumb. Unlike the case with red pandas, the evolution of thumbs in giant pandas may have been tied to a shift from meat to plants.

Unfortunately, Stephen Jay Gould is not around to take delight in this new discovery (he died in 2002). I'd wager that he would have been particularly tickled by the fact that red pandas now embody not one but two of the concepts Gould championed in his career. He argued that evolutionary biologists must always remember that a structure that has one function today may have actually evolved millions of years ago for a different function altogether. Feathers, for example, don't seem to have evolved initially for flight. Some scientists liked to call these structures preadaptations, but Gould thought that term smacked of some kind of foreknowledge, which evolution cannot have. He preferred the term exaptation. The red panda's thumb turns out to be a striking exaptation—a tool for grasping branches that was turned into a tool for eating plants. It's an exaptation we humans can certainly appreciate. After all, our primate ancestors used their opposable thumbs to clamber around branches, perhaps alongside some of the ancient relatives of red pandas. While red pandas used their opposable thumbs to eat plants, hominids used them to make stone tools. Civilization and all the rest followed suit.

Comments (12) + TrackBacks (0) | Category: Evolution


COMMENTS

1. coturnix on December 26, 2005 06:20 PM writes...

Way cool! Thank you.

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2. GMBurns on December 26, 2005 09:36 PM writes...

I'm curious about your comment that the Hs opposable thumb was for grasping branches during clmbing.
I know that chimps and so on do not have them, and a little Google searching points at habilis as being the first human ancestor suspected of having them. By the time of habilis, of course, we were quite bipedal, and I am not aware of any evidence that at that time or since we did much tree-clambering.
Is there something I have missed?
If habilis was the first, it would seem that the opposable thumb has a history remarkably coincident with tool use.

Michael Burns

Permalink to Comment

3. Carl Zimmer on December 26, 2005 09:52 PM writes...

Re opposable thumbs in primates--see here for a brief description.

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4. Hai~Ren on December 27, 2005 09:21 AM writes...

Most fascinating... another example of convergent evolution, although it does boggle the mind that a large terrestrial bear and a small partially arboreal ?mustelid both evolved the same trait. But wasn't the red panda discovered before the giant panda?

Re GMBurns: I've read somewhere that humans are unparalleled among primates in terms of manual dexterity; perhaps a trait that evolved as dependence on tools increased?

Permalink to Comment

5. SteveF on December 27, 2005 07:17 PM writes...

Saw some red pandas at the zoo today. Beautiful creatures. I almost purchased Triumph of an Idea whilst I was there (for 25 of the finest English pounds). I'm unsure Carl, is it worth waiting around for the new edition?

Permalink to Comment

6. jackd on December 29, 2005 11:44 AM writes...

Before I venture a small critique, let me add to the praise that your blog and your writing in general has earned. At the Water's Edge and Parasite Rex were both high on my Christmas wish list, and I'm rather disappointed not to have gotten them. But it's a lack I can remedy myself, and I will.

I think you slightly misread Gould at one point - or perhaps I slightly misread your article.

Gould did not argue that optimal design is not evidence of evolution per se, but that as evidence it does not distinguish between evolutionary adaptation and deliberate design.

Gould:"But ideal design is a lousy argument for evolution, for it mimics the postulated action of an omnipotent creator. Odd arrangements and funny solutions are the proof of evolution—paths that a sensible God would never tread but that a natural process, constrained by history, follows perforce."

Although Gould did provide a much-needed pushback against the excesses of adaptationism, in this case his argument was poised against creationists, rather than his colleagues.

Permalink to Comment

7. truth machine on December 31, 2005 06:51 AM writes...

Evolution is so much fun. Those poor creationist saps have no idea what they're missing.

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8. Leon Brooks on January 2, 2006 12:11 AM writes...

jackd: Good point. The argument staggers a bit when you consider the potential gulf between what we might consider good or useful and what an omnipotent and/or farseeing diety might assign those same attributes, but it was (and is) still pretty close to a unique voice of reason from a relatively mainstream scientist.

truth machine: The speculation can be fun, yes, but it’s very rare for the many hours of gruelling fieldwork (hereinafter “the real work”) which provide the basic data upon which we speculate to be much of a rib-tickler.

Carl Zimmer: I’m wondering if you have an opinion on this as a potential driver of mutations: ⇒ www.thunderbolts.info

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9. Stephen Uitti on January 3, 2006 02:39 PM writes...

If planning could be considered 'some kind of foreknowledge', it isn't clear that it can be ruled out. As far as I know, we don't really know everything about how genetics work. Consider that the human genome represents about as much working information as the human brain can store and process. That humans can plan is pretty clear. Another similarity is that we talk about how ideas evolve... Mechanisms for planning would likely be complex, and difficult to understand. Proof that humans can plan requires watching humans, and does not require knowledge of how it is done. Since genetics operate orders of magnitude slower, this strategy will take so long that knowledge of a mechanism would be likely be quicker. Once all mechanisms and their interactions are known fully (a likely goal anyway), then perhaps planning could be ruled out. Who knows? Perhaps sufficiently complex genomes are self aware...

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10. outeast on January 4, 2006 05:22 AM writes...

SciAm has an article in the Dec05 issue on the evolution of fins into feet in which the writer, Jennifer Clack, discusses an early tetrapod called Acanthostega. She writes about how this animal had legs and feet but no ankles (and thus couldn't have supported its weight on its legs out of the water) -- and she mentions that it had more than its fair share of digits (eight per foot). She doesn't highlight it, but she seems to imply that the later evolution of loadbearing feet coincided with a reduction in the number of digits. Did the evolution of ankles involve the cooption of finger bones? If so, the separate recreation of (effectively) digits from ankle bones in Simocyon batalleri and Pandas would make sense, and indeed the big surprise might be that it seems to have happened so little...

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11. Richard Bentley on February 17, 2006 06:24 PM writes...

I HATE the word exaption. Preadaption is fine. Exaption reminds me of another pompous term - "paradigm". A word I've always hated since as a physicist (at least originally) a number of physicists began using it (I assume because it helped their self-importance) in their writings. Otherwise, a really interesting article.

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12. luca on March 1, 2006 10:13 AM writes...

http://loom.corante.com/archives/2005/12/26/the_other_pandas_thumb.php#57521

now that's an interesting question... any answer, albeit tentative?

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