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Corante Blogs examine, through the eyes of leading observers, analysts, thinkers, and doers, critical themes and memes in technology, business, law, science, and culture.

The Press Will Be Outsourced Before Stopped

Vin Crosbie, on the challenges, financial and otherwise, that newspaper publishers are facing: "The real problem, Mr. Newspaperman, isn't that your content isn't online or isn't online with multimedia. It's your content. Specifically, it's what you report, which stories you publish, and how you publish them to people, who, by the way, have very different individual interests. The problem is the content you're giving them, stupid; not the platform its on."
by Vin Crosbie in Rebuilding Media

Travels In Numerica Deserta

There's a problem in the drug industry that people have recognized for some years, but we're not that much closer to dealing with it than we were then. We keep coming up with these technologies and techniques which seem as if they might be able to help us with some of our nastiest problems - I'm talking about genomics in all its guises, and metabolic profiling, and naturally the various high-throughput screening platforms, and others. But whether these are helping or not (and opinions sure do vary), one thing that they all have in common is that they generate enormous heaps of data.
by Derek Lowe in In the Pipeline

Disrobing the Emperor: The online “user experience” isn't much of one

Now that the Web labor market is saturated and Web design a static profession, it's not surprising that 'user experience' designers and researchers who've spent their careers online are looking for new worlds to conquer. Some are returning to the “old media” as directors and producers. More are now doing offline consulting (service experience design, social policy design, exhibition design, and so on) under the 'user experience' aegis. They argue that the lessons they've learned on the Web can be applied to phenomena in the physical and social worlds. But there are enormous differences...
by Bob Jacobson in Total Experience

Second Life: What are the real numbers?

Clay Shirky, in deconstructing Second Life hype: "Second Life is heading towards two million users. Except it isn’t, really... I suspect Second Life is largely a 'Try Me' virus, where reports of a strange and wonderful new thing draw the masses to log in and try it, but whose ability to retain anything but a fraction of those users is limited. The pattern of a Try Me virus is a rapid spread of first time users, most of whom drop out quickly, with most of the dropouts becoming immune to later use."
by Clay Shirky in Many-to-Many

The democratisation of everything

Over the last few years we've seen old barriers to creativity coming down, one after the other. New technologies and services makes it trivial to publish text, whether by blog or by print-on-demand. Digital photography has democratised a previously expensive hobby. And we're seeing the barriers to movie-making crumble, with affordable high-quality cameras and video hosting provided by YouTube or Google Video and their ilk... Music making has long been easy for anyone to engage in, but technology has made high-quality recording possible without specialised equipment, and the internet has revolutionised distribution, drastically disintermediating the music industry... What's left? Software maybe? Or maybe not."
by Suw Charman in Strange Attractor

RNA Interference: Film at Eleven

Derek Lowe on the news that the Nobel Prize for medicine has gone to Craig Mello and Andrew Fire for their breakthrough work: "RNA interference is probably going to have a long climb before it starts curing many diseases, because many of those problems are even tougher than usual in its case. That doesn't take away from the discovery, though, any more than the complications of off-target effects take away from it when you talk about RNAi's research uses in cell culture. The fact that RNA interference is trickier than it first looked, in vivo or in vitro, is only to be expected. What breakthrough isn't?"
by Derek Lowe in In the Pipeline

PVP and the Honorable Enemy

Andrew Phelps: "Recently my WoW guild has been having a bit of a debate on the merits of Player-vs.-Player (PvP) within Azeroth. My personal opinion on this is that PvP has its merits, and can be incredible fun, but the system within WoW is horridly, horribly broken. It takes into account the concept of the battle, but battle without consequence, without emotive context, and most importantly, without honor..."

From later in the piece: "When I talk about this with people (thus far anyway) I typically get one of two responses, either 'yeah, right on!' or 'hey, it’s war, and war isn’t honorable – grow the hell up'. There is a lot to be said for that argument – but the problem is that war in the real historical world has very different constraints that are utterly absent from fantasized worlds..."
by Andrew Phelps in Got Game

Rats Rule, Right?

Derek Lowe: "So, you're developing a drug candidate. You've settled on what looks like a good compound - it has the activity you want in your mouse model of the disease, it's not too hard to make, and it's not toxic. Everything looks fine. Except. . .one slight problem. Although the compound has good blood levels in the mouse and in the dog, in rats it's terrible. For some reason, it just doesn't get up there. Probably some foul metabolic pathway peculiar to rats (whose innards are adapted, after all, for dealing with every kind of garbage that comes along). So, is this a problem?.."
by Derek Lowe in In the Pipeline

Really BAD customer experience at Albertsons Market

Bob Jacobson, on shopping at his local Albertsons supermarket where he had "one of the worst customer experiences" of his life: "Say what you will about the Safeway chain or the Birkenstock billionaires who charge through the roof for Whole Foods' organic fare, they know how to create shopping environments that create a more pleasurable experience, at its best (as at Whole Foods) quite enjoyable. Even the warehouses like Costco and its smaller counterpart, Smart & Final, do just fine: they have no pretentions, but neither do they dump virtual garbage on the consumer merely to create another trivial revenue stream, all for the sake of promotions in the marketing department..."
by Strange Attractor in Total Experience

The Guardian's "Comment is Free"

Kevin Anderson: "First off, I want to say that I really admire the ambition of the Guardian Unlimited’s Comment is Free. It is one of the boldest statements made by any media company that participation needs to be central to a radical revamp of traditional content strategies... It is, therfore, not hugely surprising to find that Comment is Free is having a few teething troubles..."
by Kevin Anderson in strange
In the Pipeline: Don't miss Derek Lowe's excellent commentary on drug discovery and the pharma industry in general at In the Pipeline

The Loom

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December 27, 2004

All the News That's Too Big To Print

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Posted by Carl Zimmer

Size matters. At least that's the result of some recent research on long-term evolutionary trends that I'll be reporting in tomorrow's New York Times. Here are the first few paragraphs...

Bigger is better, the saying goes, and in the case of evolution, the saying is apparently right.

The notion that natural selection can create long-term trends toward large size first emerged about a century ago, but it fell out of favor in recent decades. Now researchers have taken a fresh look at the question with new methods, and some argue that these trends are real.

Biologists have recently found that in a vast majority of animals and plants, bigger individuals are more successful at reproducing than smaller ones, whether they are finches, damselflies or jimsonweed.

Nor is this edge a fleeting one. Natural selection can steadily drive lineages to bigger sizes for vast stretches of time. The giant dinosaurs that made the earth tremble, for example, were the product of the long-running advantage of being big over tens of millions of years.

"I think it holds up very well, and a lot better than a lot of people have said over the years," said David Hone, a paleontologist at the University of Bristol. Mr. Hone and others argue the push toward bigger size is so strong and persistent that there must be significant forces pushing the other way. Otherwise, we would be living on a planet of giants.

You can read the rest of the article here.

As is so often the case, I wish the article could have ended with a big fat asterisk, along with a footnote reading, "There's more to the story, but you'll have to visit The Loom for it."

This notion about size increase, known as Cope's Rule, has a long, checkered history, and this history say a lot about how the entire science of evolutionary biology has changed over the years. Cope's Rule is named after the American paleontologist Edward Drinker Cope, who made a careful study of the fossils of North America in the late 1800s. Cope belonged to the first generation of scientists who grappled with Darwin's Origin of Species, published in 1859. Its reception was decidedly mixed. On the one hand, Darwin was hugely successful in persuading scientists that life had evolved over a long period of time, thanks to the huge amount of evidence he marshalled fossils, embryos, and the distribution of living species. But Darwin didn't fare so well in his argument about what drove the evolution of life. He was trying to quash the popular ideas of Lamarck, who had offered two mechanisms for evolution. First, traits acquired over an individual's lifetime are passed on to its descendants. Second, life contains a mysterious force that continually drives it from lowly primordial slime towards higher levels. Darwin rejected both of these mechanisms almost completely, replacing them with natural selection.

This second argument did not fare as well in the late 1800s as the first. Many biologists came to see life as the product of evolution, but they saw evolution as the product of various Lamarckian, long-term forces. Cope was one of these scientists. He looked at the early mammals of North America--tiny creatures, for the most part--and saw that later they were replaced by much larger species. Here, he decided, was evidence of an evolutionary force that could operate over millions of years, a force, moreover that was separate from natural selection. Others found similar patterns in other groups, such as corals and foraminfera.

In the mid-twentieth century, evolutionary biology went through a revolution known as the Modern Synthesis. Scientists came to understand how genes mutate, and how mutations helped make natural selection possible. Leftover Lamarckism found no vindication of its own, and faded away. Biologists still accepted Cope's Rule as a genuine pattern in the fossil record, but they offered a different mechanism than Cope originally had. Instead of some mysterious long-term trend, good old natural selection was at work. Bigger individuals were favored in populations, and over millions of years, this edge produced bigger and bigger species.

In the 1970s, a group of young paleontologists challenged some aspects of the Modern Synthesis. They rejected the idea that every long-term pattern in the fossil record could be neatly explained by short-term natural selection. And Cope's Rule became one of their favorite targets. A trend towards bigger sizes could appear in the fossil record, they pointed out, even if natural selection didn't favor bigger individuals. Small species, for example, might be more likely to survive mass extinctions, and would thus have been more likely to found major new groups of species. Because they were small, their descendants couldn't get much smaller before they hit a minimum size limit. But they'd have plenty of room at the larger end of the spectrum. Even without an inherent advantage to being big, the lineage would gradually get larger.

Although a number of paleontologists were involved in this rebellion, Stephen Jay Gould was its most outspoken member. He made Cope's Rule a favorite object of his derision, a case study of how our subjective biases ("bigger is better") shape our interpretation of the natural world. And from the 1970s to the 1990s, he had pretty good reason to be scornful. The evidence for Cope's Rule turned out not to be all that strong. Or to put it more precisely, scientists who promoted Cope's Rule did not test it rigorously against other possible explanations.

My article looks at some recent research that gives it the careful look it demands. And, in something of a surprise, Cope's Rule is enjoying a renaissance. In most living populations of animals and plants studied so far, natural selection shows a strong preference for larger size. In rigorous studies of the fossil record, lineages of dinosaurs and mammals show signs of having evolved to bigger sizes over millions of years thanks to natural selection.

So was Gould wrong? Yes and no. Cope's Rule is not, as he claimed, a "psychological artefact." But there must be more to the story than natural selection favoring bigger indvidiuals. Otherwise, we'd live on a planet of giants. In my article, I mention a few possible forces that work against Cope's Rule. One that I didn't have space to mention is a force near and dear to Gould's heart: species selection. Just as individuals are favored or disfavored by natural selection, species may also undergo a selection of their own, with some species giving rise to more descendant species, while others go extinct. In the case of size, what's good for the individual may not be so good for the species.

Species selection has been kicked around for quite some time to explain why Cope's Rule hasn't made everything enormous. Recently, a nice study of fossils came out that supported the idea. Paleontologist Blaire Van Valkenburgh of UCLA and her colleauges have documented how big size may have doomed two groups of canids-the ancient relatives of today's dogs and wolves-in North America. In both cases, the canids evolved to larger sizes over millions of years, only to dwindle away to extinction.

As Van Valkenburgh and her colleagues pointed out in Science in October, small canids could have found enough energy in rabbit-sized prey and other foods such as fruits. But once the canids got above about forty pounds, they could no longer survive on this fare. They would spend more energy running after prey than they got eating them. As the canids got bigger, Van Valkenburgh argues, they shifted to hunting prey as big as themselves or bigger. Consistent with this hypothesis, Van Valkenburgh has found that as both groups of canids got large, their jaws and teeth also evolved. They lost molars, their front teeth got larger, and their jaws became stout and strong. This shift put these canids in an evolutionary trap. If their large prey became extinct, they risked starving to death. Nor could they re-evolve the versatile teeth and jaws that had allowed their ancestors to eat different sorts of food. They didn't go extinct because they were big; they went extinct because they were specialized.

Scientists I spoke to for this article were confident that Cope's Rule would figure in a lot of research in coming years. They've now got the tools they need to dissect long-term trends like never before--from databases of fossils to detailed evolutionary trees to sophisticated statistical methods. After more than a century, Cope's Rule still has plenty of life in it yet.

Comments (3) + TrackBacks (0) | Category: Evolution


COMMENTS

1. Chris Clarke on December 28, 2004 08:25 PM writes...

Fascinating piece, Carl, and I especially apprecate the mention of overfishing as a counterweight to Cope's (if it is a) Rule.

That's Edwin Drinker Cope, by the way. No sense making Othniel Marsh's ghost snicker any more than he needs to.

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2. kyan gadac on December 30, 2004 10:20 AM writes...

Surely, for some animals Cope's rule must apply, since their size seems to be limited by physiology and gravity more than any other constraint:- the blue whale, the elephant and the redwood. Presumably they all, in evolutionary terms, started out small.

While getting bigger is one option, getting faster is another competing option. As well, getting bigger also makes you more desirable as food, remembering that parasites(small and slow) are as hungry, as predators(big and fast).

As for long term trends, I await reports of giant archeobacteria.

People who think of evoluution as a single species affair are myopic and I suspect that that is the myopia that Gould et al were criticising.

Permalink to Comment

3. Chris Clarke on January 1, 2005 08:15 PM writes...

Um, I retract my correction. Silly and embarrassing of me.

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