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Corante Blogs examine, through the eyes of leading observers, analysts, thinkers, and doers, critical themes and memes in technology, business, law, science, and culture.

The Press Will Be Outsourced Before Stopped

Vin Crosbie, on the challenges, financial and otherwise, that newspaper publishers are facing: "The real problem, Mr. Newspaperman, isn't that your content isn't online or isn't online with multimedia. It's your content. Specifically, it's what you report, which stories you publish, and how you publish them to people, who, by the way, have very different individual interests. The problem is the content you're giving them, stupid; not the platform its on."
by Vin Crosbie in Rebuilding Media

Travels In Numerica Deserta

There's a problem in the drug industry that people have recognized for some years, but we're not that much closer to dealing with it than we were then. We keep coming up with these technologies and techniques which seem as if they might be able to help us with some of our nastiest problems - I'm talking about genomics in all its guises, and metabolic profiling, and naturally the various high-throughput screening platforms, and others. But whether these are helping or not (and opinions sure do vary), one thing that they all have in common is that they generate enormous heaps of data.
by Derek Lowe in In the Pipeline

Disrobing the Emperor: The online “user experience” isn't much of one

Now that the Web labor market is saturated and Web design a static profession, it's not surprising that 'user experience' designers and researchers who've spent their careers online are looking for new worlds to conquer. Some are returning to the “old media” as directors and producers. More are now doing offline consulting (service experience design, social policy design, exhibition design, and so on) under the 'user experience' aegis. They argue that the lessons they've learned on the Web can be applied to phenomena in the physical and social worlds. But there are enormous differences...
by Bob Jacobson in Total Experience

Second Life: What are the real numbers?

Clay Shirky, in deconstructing Second Life hype: "Second Life is heading towards two million users. Except it isn’t, really... I suspect Second Life is largely a 'Try Me' virus, where reports of a strange and wonderful new thing draw the masses to log in and try it, but whose ability to retain anything but a fraction of those users is limited. The pattern of a Try Me virus is a rapid spread of first time users, most of whom drop out quickly, with most of the dropouts becoming immune to later use."
by Clay Shirky in Many-to-Many

The democratisation of everything

Over the last few years we've seen old barriers to creativity coming down, one after the other. New technologies and services makes it trivial to publish text, whether by blog or by print-on-demand. Digital photography has democratised a previously expensive hobby. And we're seeing the barriers to movie-making crumble, with affordable high-quality cameras and video hosting provided by YouTube or Google Video and their ilk... Music making has long been easy for anyone to engage in, but technology has made high-quality recording possible without specialised equipment, and the internet has revolutionised distribution, drastically disintermediating the music industry... What's left? Software maybe? Or maybe not."
by Suw Charman in Strange Attractor

RNA Interference: Film at Eleven

Derek Lowe on the news that the Nobel Prize for medicine has gone to Craig Mello and Andrew Fire for their breakthrough work: "RNA interference is probably going to have a long climb before it starts curing many diseases, because many of those problems are even tougher than usual in its case. That doesn't take away from the discovery, though, any more than the complications of off-target effects take away from it when you talk about RNAi's research uses in cell culture. The fact that RNA interference is trickier than it first looked, in vivo or in vitro, is only to be expected. What breakthrough isn't?"
by Derek Lowe in In the Pipeline

PVP and the Honorable Enemy

Andrew Phelps: "Recently my WoW guild has been having a bit of a debate on the merits of Player-vs.-Player (PvP) within Azeroth. My personal opinion on this is that PvP has its merits, and can be incredible fun, but the system within WoW is horridly, horribly broken. It takes into account the concept of the battle, but battle without consequence, without emotive context, and most importantly, without honor..."

From later in the piece: "When I talk about this with people (thus far anyway) I typically get one of two responses, either 'yeah, right on!' or 'hey, it’s war, and war isn’t honorable – grow the hell up'. There is a lot to be said for that argument – but the problem is that war in the real historical world has very different constraints that are utterly absent from fantasized worlds..."
by Andrew Phelps in Got Game

Rats Rule, Right?

Derek Lowe: "So, you're developing a drug candidate. You've settled on what looks like a good compound - it has the activity you want in your mouse model of the disease, it's not too hard to make, and it's not toxic. Everything looks fine. Except. . .one slight problem. Although the compound has good blood levels in the mouse and in the dog, in rats it's terrible. For some reason, it just doesn't get up there. Probably some foul metabolic pathway peculiar to rats (whose innards are adapted, after all, for dealing with every kind of garbage that comes along). So, is this a problem?.."
by Derek Lowe in In the Pipeline

Really BAD customer experience at Albertsons Market

Bob Jacobson, on shopping at his local Albertsons supermarket where he had "one of the worst customer experiences" of his life: "Say what you will about the Safeway chain or the Birkenstock billionaires who charge through the roof for Whole Foods' organic fare, they know how to create shopping environments that create a more pleasurable experience, at its best (as at Whole Foods) quite enjoyable. Even the warehouses like Costco and its smaller counterpart, Smart & Final, do just fine: they have no pretentions, but neither do they dump virtual garbage on the consumer merely to create another trivial revenue stream, all for the sake of promotions in the marketing department..."
by Strange Attractor in Total Experience

The Guardian's "Comment is Free"

Kevin Anderson: "First off, I want to say that I really admire the ambition of the Guardian Unlimited’s Comment is Free. It is one of the boldest statements made by any media company that participation needs to be central to a radical revamp of traditional content strategies... It is, therfore, not hugely surprising to find that Comment is Free is having a few teething troubles..."
by Kevin Anderson in strange
In the Pipeline: Don't miss Derek Lowe's excellent commentary on drug discovery and the pharma industry in general at In the Pipeline

The Loom

« The Long Road from Genes to God | Main | Nobel and Darwin »

September 23, 2004

A Puzzle for the Autumnal Equinox

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Posted by Carl Zimmer

Every now and then you come across a scientific hypothesis that is so elegant and powerful in its ability to explain that it just feels right. Yet that doesn't automatically make it right. Even when an elegant hypothesis gets support from experiments, it's not time to declare victory. This is especially true in biology, where causes and effects are all gloriously tangled up with one another. It can take a long time to undo the tangle, and hacking away at it, Gordian-style, won't help get to the answer any faster.

I was reminded of this while reading Andrew Brown's review of A Reason For Everything by Marek Kohn in the Guardian. The book sounds fascinating. Kohn recounts how a small group of English biologists shaped the course of modern evolutionary biology--in particular, by pondering how adaptation through natural selection could account for just about everything in nature. One of the foremost of these thinkers was William Hamilton, who died a few years ago. Brown writes that "even the colours of the leaves on autumn trees around the grave of Bill Hamilton have been given a meaning by evolution - they are so vivid in order to warn parasites that the tree is healthy enough to repel them."

I wrote about Hamilton's leaf-signal hypothesis here. It is one of those beautifully elegant hypotheses, and some studies have even supported Hamilton's idea that the brilliant colors of autumn evolved as a way for trees to tell insects to buzz off. But readers should not have finished reading my post by thinking, "Well, that sews that question up."

Here's why. H. Martin Schaefer and David M. Wilkinson have written a review of the Hamilton hypothesis which has just gone into press in Trends in Ecology and Evolution. They offer a lot of evidence suggesting that Hamilton may have been wrong--or at least may not have captured the whole picture. They show how a completely different process may be responsible for fall colors. Trees may produce them as they prepare for winter.

When leaves die, their nitrogen, phosphorus, and other nutrients get shipped back into their tree. It's a crucial, carefully orchestrated stage in a tree's life; it will survive on these reserves through the winter. In order to pump the nutrients back into the branches, the leaves need a lot of energy, which they have to generate with photosynthesis. That's where the pigments may come in. Pigments act as a sunscreen for leaves, shielding them from harmful UV rays that can shut down their photosynthetic machinery . What's more, as the leaves ship their nutrients back to the tree, they may produce harmful free radicals as a byproduct. It just so happens that pigments are veritable magnets for free radicals.

If the authors are right, then the evidence that seems to support Hamilton's hypothesis might not actually support it at all. For example, researchers have found that birch trees that display brighter leaves grow more vigorously the following year. You could argue that these trees did so well because they could create such strong warning signals, which warded off insects. But perhaps those bright leaves are just a sign that these trees were doing a particularly good job of protecting their leaves as they stored nutrients for the winter--nutrients that made them more vigorous the follwing spring.

Fortunately, evolutionary biologists can do more than just come up with beautiful hypotheses. They can test them. Schaefer and Wilkinson lay out a list of experiments that could discriminate between the leaf-signal hypothesis and the winter-storage hypothesis. It's even possible that evolution has produced fall foliage in order to both ward off insects and ship nutrients out of the leaf. As beautiful as any one hypothesis may be, it's the interplay of different ideas and the experiments that put them to the test that's most beautiful of all. It would not bother Hamilton one bit, I suspect, if it turned out that the leaves that fell on his grave had taken on their autumn colors for an entirely different purpose.

Comments (13) + TrackBacks (0) | Category: Evolution


COMMENTS

1. William Gruzenski on September 24, 2004 01:45 AM writes...

Everything is in your own best interest. Everything. Keep looking.

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2. John on September 25, 2004 02:01 AM writes...

facile; simplistic

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3. Eric on September 25, 2004 05:27 AM writes...

"follwing" should be "following"

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4. Richard on September 25, 2004 10:24 AM writes...

I never liked the leaf-signal hypothesis (elegant though it undoubtedly is). It seemed to me that the fact that leaves change colour just before they fall implies that the colour-change is more likely to be a by-product of the leaf-dropping process. Not all we Englishmen are strict adaptationists!

(Thanks for the link in your sidebar, by the way.)

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5. Renee on September 25, 2004 04:31 PM writes...

This doesn't explain why countries such as New Zealand are green all year round, with no naturally occurring deciduous plants - despite a healthy supply of insects ...

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6. Kevin on September 26, 2004 01:30 PM writes...

Why should a deciduous tree in autumn concern itself about leaf-eating parasites? Those leaves are just about to fall off, anyway.

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7. Dano on September 26, 2004 01:38 PM writes...

Always enjoyable posts, Carl. Keep up the good work.

My horticulture education at a land-grant Uni taught us that the yellow/red/orange pigments are always there.

The absence of green in the leaf is the translocation of nutrients back into the plant for storage. The grad and PhD students that were studying this issue at our Uni found that there wasn't necessarily any additional tannins or other bad-tasting goop in the leaf.

Best,

D

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8. Jane on September 26, 2004 08:40 PM writes...

Latest hypothesis on why NZ trees are evergreens- soil quality- NZ soil is very young geologically and quite nutrient poor- with mild winters for the most part (its a sub tropical rain forest mostly so cold rain rather than snow to deal with)

I never bought the parasites hypothesis my self- seemed too much effort for gain

J

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9. Dr. Faustroll on September 28, 2004 02:40 PM writes...

Alchemists, with their emphasis on the symbolic meaning of the colors red and green, had other ideas, of course.

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10. Andrew Brown on September 29, 2004 06:47 AM writes...

Nice catch. Hamilton was certainly wrong about Aids. But his argument about leaf colours wasn't that they deterred possible leaf-eating parasites. He thought they deterred the parasites which might eat their way into the trunk (unless I have completely misremembered).

If the pigments are always present, and only show up when the nutrients are brought back into the trunk, this doesn't affect Hamilton's claim that there might be selection for high levels of pigment.

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11. Mark Hadfield on September 29, 2004 11:23 PM writes...

Leaves fall off evergreen trees, too. And it's a programmed process (I think). They just don't all fall off at the same time.

The parasite-warning hypothesis seems to be inapplicable to evergreen trees. (If a parasite sees a lot of yellow or red leaves on an evergreen tree, it will probably think "That tree's losing all its leaves. It's sick.") But the nutrient reclamation hypothesis shoud apply.

Do leaves on evergreen trees turn bright colours before they fall off? Gee, I'm not sure. I think they turn yellow. I think that on southern beeches (Nothofagus) in New Zealand they turn red.

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12. Ian Orchard on September 30, 2004 02:24 PM writes...

Has anyone checked the optical wavelengths visible to a range of insects? Can they see the beautiful (to us) display?

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13. lalitree on October 27, 2004 07:33 PM writes...

Research has shown that the biochemical process of chlorophyll breakdown is directly tied to senesence (in Arabidopsis, at least)--pheide a oxygenase, a component of chorophyll breakdown is only active during that time. To me, this suggests that as Richard said above, the color change is a by-product of the leaf-dropping process: as chorophyll is degraded as part of leaf senesence, the pigments that were always there then become visible.

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