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Corante Blogs examine, through the eyes of leading observers, analysts, thinkers, and doers, critical themes and memes in technology, business, law, science, and culture.

The Press Will Be Outsourced Before Stopped

Vin Crosbie, on the challenges, financial and otherwise, that newspaper publishers are facing: "The real problem, Mr. Newspaperman, isn't that your content isn't online or isn't online with multimedia. It's your content. Specifically, it's what you report, which stories you publish, and how you publish them to people, who, by the way, have very different individual interests. The problem is the content you're giving them, stupid; not the platform its on."
by Vin Crosbie in Rebuilding Media

Travels In Numerica Deserta

There's a problem in the drug industry that people have recognized for some years, but we're not that much closer to dealing with it than we were then. We keep coming up with these technologies and techniques which seem as if they might be able to help us with some of our nastiest problems - I'm talking about genomics in all its guises, and metabolic profiling, and naturally the various high-throughput screening platforms, and others. But whether these are helping or not (and opinions sure do vary), one thing that they all have in common is that they generate enormous heaps of data.
by Derek Lowe in In the Pipeline

Disrobing the Emperor: The online “user experience” isn't much of one

Now that the Web labor market is saturated and Web design a static profession, it's not surprising that 'user experience' designers and researchers who've spent their careers online are looking for new worlds to conquer. Some are returning to the “old media” as directors and producers. More are now doing offline consulting (service experience design, social policy design, exhibition design, and so on) under the 'user experience' aegis. They argue that the lessons they've learned on the Web can be applied to phenomena in the physical and social worlds. But there are enormous differences...
by Bob Jacobson in Total Experience

Second Life: What are the real numbers?

Clay Shirky, in deconstructing Second Life hype: "Second Life is heading towards two million users. Except it isn’t, really... I suspect Second Life is largely a 'Try Me' virus, where reports of a strange and wonderful new thing draw the masses to log in and try it, but whose ability to retain anything but a fraction of those users is limited. The pattern of a Try Me virus is a rapid spread of first time users, most of whom drop out quickly, with most of the dropouts becoming immune to later use."
by Clay Shirky in Many-to-Many

The democratisation of everything

Over the last few years we've seen old barriers to creativity coming down, one after the other. New technologies and services makes it trivial to publish text, whether by blog or by print-on-demand. Digital photography has democratised a previously expensive hobby. And we're seeing the barriers to movie-making crumble, with affordable high-quality cameras and video hosting provided by YouTube or Google Video and their ilk... Music making has long been easy for anyone to engage in, but technology has made high-quality recording possible without specialised equipment, and the internet has revolutionised distribution, drastically disintermediating the music industry... What's left? Software maybe? Or maybe not."
by Suw Charman in Strange Attractor

RNA Interference: Film at Eleven

Derek Lowe on the news that the Nobel Prize for medicine has gone to Craig Mello and Andrew Fire for their breakthrough work: "RNA interference is probably going to have a long climb before it starts curing many diseases, because many of those problems are even tougher than usual in its case. That doesn't take away from the discovery, though, any more than the complications of off-target effects take away from it when you talk about RNAi's research uses in cell culture. The fact that RNA interference is trickier than it first looked, in vivo or in vitro, is only to be expected. What breakthrough isn't?"
by Derek Lowe in In the Pipeline

PVP and the Honorable Enemy

Andrew Phelps: "Recently my WoW guild has been having a bit of a debate on the merits of Player-vs.-Player (PvP) within Azeroth. My personal opinion on this is that PvP has its merits, and can be incredible fun, but the system within WoW is horridly, horribly broken. It takes into account the concept of the battle, but battle without consequence, without emotive context, and most importantly, without honor..."

From later in the piece: "When I talk about this with people (thus far anyway) I typically get one of two responses, either 'yeah, right on!' or 'hey, it’s war, and war isn’t honorable – grow the hell up'. There is a lot to be said for that argument – but the problem is that war in the real historical world has very different constraints that are utterly absent from fantasized worlds..."
by Andrew Phelps in Got Game

Rats Rule, Right?

Derek Lowe: "So, you're developing a drug candidate. You've settled on what looks like a good compound - it has the activity you want in your mouse model of the disease, it's not too hard to make, and it's not toxic. Everything looks fine. Except. . .one slight problem. Although the compound has good blood levels in the mouse and in the dog, in rats it's terrible. For some reason, it just doesn't get up there. Probably some foul metabolic pathway peculiar to rats (whose innards are adapted, after all, for dealing with every kind of garbage that comes along). So, is this a problem?.."
by Derek Lowe in In the Pipeline

Really BAD customer experience at Albertsons Market

Bob Jacobson, on shopping at his local Albertsons supermarket where he had "one of the worst customer experiences" of his life: "Say what you will about the Safeway chain or the Birkenstock billionaires who charge through the roof for Whole Foods' organic fare, they know how to create shopping environments that create a more pleasurable experience, at its best (as at Whole Foods) quite enjoyable. Even the warehouses like Costco and its smaller counterpart, Smart & Final, do just fine: they have no pretentions, but neither do they dump virtual garbage on the consumer merely to create another trivial revenue stream, all for the sake of promotions in the marketing department..."
by Strange Attractor in Total Experience

The Guardian's "Comment is Free"

Kevin Anderson: "First off, I want to say that I really admire the ambition of the Guardian Unlimited’s Comment is Free. It is one of the boldest statements made by any media company that participation needs to be central to a radical revamp of traditional content strategies... It is, therfore, not hugely surprising to find that Comment is Free is having a few teething troubles..."
by Kevin Anderson in strange
In the Pipeline: Don't miss Derek Lowe's excellent commentary on drug discovery and the pharma industry in general at In the Pipeline

The Loom

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March 18, 2004

Angels and Extinctions

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Posted by Carl Zimmer

thomas14LR.jpgWhen I ask scientists what's the biggest misunderstanding people have about their work, they often talk about how they know what they know. People tend to think that a scientist's job is to gather every single datum about something in nature--a mountain, a species of jellyfish, a neutron star--and then, simply by looking at all that information, see the absolute truth about it in an instant. If science departments were filled with angels, that might be the case. But they're staffed by humans with finite brains, with tight research budgets, and with only so many years left before retirement or death. In order to tackle vast questions about the fate of the universe, the history of this planet, and the tangled bank of life on Earth, they have to live with uncertainty. To understand something, they can only gather a smattering of information about it, look for patterns within the data and use well-supported theories to come up with hypotheses about them. They can then gather more information in order to test the hypotheses again, and, if need be, alter their explanations to accord with the evidence. Their conclusions can only be tentative, but they can also be powerful. We were not around when the Earth formed, and we can only look at indirect clues in certain rocks and meteorites. And yet scientists have a good idea of when the Earth formed, how quickly the iron core settled to the center of the planet, when oceans began to appear, and so on.

Many bogus attacks on scientific research play on this common misunderstanding of science-as-revelation. If scientists don't know everything they can't conclude anything. Paleoanthropologists have found less than two dozen species of hominids from the past six million years--therefore they can't draw any conclusions about how humans appeared on Earth. Climatologists don't have a perfect temperature record for the planet--therefore they can't say anything about how man-made pollution is warming the atmosphere. In cases like climate change, these bogus attacks spread from science to policy based on science. To hear some people talk, we should only do something about climate change once we have tracked every molecule in the atmosphere since the dawn of civilizaiton and can predict its course for the next thousand years.

Extinction is a particularly good example of how confusion about the nature of science can cause serious trouble. In January I wrote a couple posts about some research that indicates global warming could cause a vast wave of extinctions in the next century, and how some critics deceptively emplyed the Imperfect Knowledge gambit. Today Science is publishing an important paper that may well attract the same specious criticisms, the same calls to ignore anything less than the wisdom of angels. (Here's the press release.)

Here's the lowdown:

British researchers have been working for the last decade to carry out the most ambitious analysis of changing biodiversity ever attempted. They took advantage of the fact that in the 1950s and 1960s, professional biologists and amateur volunteers began doing painstaking surveys of several groups of species around Britain. Mapmakers had carved up England into 10-kilometer-square parcels, and every year the surveyors would take a census of the species in each one. In the mid-1990s, researchers realized that this amazing database of biodiversity, unparalleled in the world, could let them track broad patterns of change. They picked out three very different groups of species to compare--butterflies, plants, and birds. They then chose the results from a few years in the early parts of these surveys to compare with results from the 1980s and 1990s. The scale of the comparison was staggering: every single species of butterfly, plant and bird known to live in England was tallied; the researchers analyzed 15 million records put together by 20,000 volunteers.

The results were bleak. Over a quarter of all native plant species had disappeared from at least one the survey squares in their range. Half the birds did. Butterflies fare worst, with 71% surrendering at least one square. But the average retreat was actually much bigger. The typical butterfly species vanished from 13% of its range, while the fastest-declining 10% of British butterfly species can't be found in over half of their former range.

There has been a lot of debate about how badly different groups of species are faring these days. Birds have been carefully studied around the world, partly because they're big enough to spot with binoculars, and they've been suffering significant losses. Plants, which can't move out of view, have also been pretty well studied (although not as well as birds). But could the same be said for insects, which number in the millions of species and are far harder to study? The answer, at least in this study, is yes.

What's particularly striking about this survey is that there are many good reasons to think that biodiversity has had it much easier in Britain over the past 50 years than man other parts of the world. Most of its forests had been cleared away many centuries earlier, so that the animals and plants living in 1950 had been living in fragmented habitats for a long time. Britain has suffered relatively few invasions of aggressive alien species that could have driven native ones extinct. Conservation is important to the British. And global warming, for the last few decades at least, has actually made Britain a better place for butterflies and plants to thrive. Nevertheless, the biodiversity of Great Britain is shrinking, and shrinking fast. That bodes ill for other parts of the world, particularly ones that are home to many species restricted to tiny ranges. (Many species in Britain can also be found elsewhere in Europe, which is why the population declines in Britain have not led to all-out extinctions yet.)

The scientists conclude: "If insects elsewhere are similarly sensitive, we tentatively agree with the suggestion that the known global exticntion rates of vertebrate and plant species may have an unrecorded parallel among insects, strengthening the hypothesis, derived from plant, vertebrate, and certain mollusk declines, that the biological world is approaching the sixth major extinction event in its history." (Italics mine.)

In a day or two I will update this entry. I am interested to see how this study gets digested by the media-punditry machine. I have a few suspicions of what we'll see:

Some environmentalists groups will trash the careful wording in the conclusion and simply say, we're doomed. If that does happen, it will be too bad, because it will undermine the care put into this research.

Some "skeptics" will say that you can't compare the surveys because different people made them, looking at different groups of species. That's actually untrue: the researchers did statistical tests to make sure that the comparisons could hold up even if there were some biases among the surveys.

I also predict that the skeptics will claim that British plants and animals have just retreated to the safety of refuges, where they can now live happily ever after. But the evidence points the other way. For example, the population declines took place "with remarkable evenness across the nation," the authors write.

The skeptics will also say you can't generalize from a small northern island nation to the world at large. But the results are actually in accord with other studies on extinctions worldwide.

I certainly don't mean to imply by all of this that this study is perfect. Perfection is, by definition, impossible to reach in science. But if critics say that we can't draw any conclusions--or any political decisions--until we are completely certain of how biodiversity is faring these days, and if they are sincere in their claim to be interested in protecting biodiversity, then I have a challenge. Go ahead and set up a project that would give us complete certainty. It took 20,000 volunteers to carry out these surveys in Britain alone. To survey the world, a few million more volunteers should do the trick.

Stay tuned.

Update here.

Comments (7) + TrackBacks (0) | Category: Evolution


COMMENTS

1. Steve on March 18, 2004 11:54 PM writes...

Agreed. The big misconception people have is the idea that scientists really traffic in facts, and theories are just someone's guess until it gets somehow proven into a fact. It's a pretty ignorant idea of science, but it's a very common one. I think it partly stems from the ordinary definition of 'theory', and most people not being aware of the very different use of the word in scientific discourse. Of course, this is assisted by scientists regularly being lax about the words theory, hypothesis, fact, etc.

Among creationist/anti-global-warming people another common thing I see is the idea that if nobody can directly witness something, no knowledge can be had. Such people have not spent any time thinking about the implications of that idea.

Permalink to Comment

2. tyas on March 19, 2004 05:19 AM writes...

that's one of anti-evolutionists' favourite attack on evolution: because science is not complete, it can't give any conclusions about this universe and life. they think science must like religion--'complete and explaining everything'. pah.

Permalink to Comment

3. Zach Frey on March 19, 2004 10:10 AM writes...

tyas,

If you think "religion" (I'm assuming you primarily mean some variation on Christianity, since that's the religion that has most basically shaped this culture) gives 'complete and explaining everything' explanations for everything, you are as unfortunately ignorant of religion as the people Steve criticizes above are ignorant of science.

Not that that's uncommon, mind you.

One minor example: it's been about 1600 years since Augustine penned that "the Scripture tell us how to go to Heaven, not how the heavens go."


peace,

Zach

Permalink to Comment

4. steve on March 19, 2004 10:49 AM writes...

Zach, he didn't mean it succeeds. He meant, in their minds it is complete and explains everything.

Permalink to Comment

5. John J. McKay on March 22, 2004 01:20 AM writes...

Great post. You provided me with a name for something I've long observed but never been able to clearly describe. I used your post as a departure for a post in my own blog (http://johnmckay.blogspot.com/archives/2004_03_14_johnmckay_archive.html#107965625163585146). As someone whose training was in history, my main contact with the Imperfect Knowledge gambit has been through Holocaust deniers. I think leading Creationists, greenhouse skeptics, and Holocaust deniers have a lot in common in the way they manipulate public misconceptions about knowledge creation to drum up support for their hidden agendas.

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6. Anna on March 24, 2004 03:36 PM writes...

"[misconception]...scientists really traffic in facts, and theories are just someone's guess until it gets somehow proven into a fact"

If your mind has trouble dealing with ambiguity and shades of gray, makes sense you'd think that way - remember this from last summer:
http://www.berkeley.edu/news/media/releases/2003/07/22_politics.shtml (Researchers help define what makes a political conservative)

In the "when you point your finger, three fingers point back at you" dept: a major reason I was, uh, fairly lousy at doing research was that _I_ had trouble dealing with ambiguity - I think anyone who's any good in science has got to be at ease with incomplete information and provisional, discardable hypotheses.

Permalink to Comment

7. Lottie Glenn on September 5, 2004 05:42 PM writes...

Brannigan: You'll be negotiating with the aliens' mysterious leaders, the
Brain Balls. They've got a lot of brains, and they've got a lot of chutzpah.
prozac online I feel like a wet parking meter on Darvon!
prozac

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